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WASP2 v1.3.0 with Nextflow pipelines is now available!
WASP2 1.3.0 documentation - Home WASP2 1.3.0 documentation - Home
  • Installation
  • Quick Start
  • Counting Module
  • Mapping Module (WASP)
  • Analysis Module
    • Single-Cell Analysis
    • Quickstart: Count Alleles in 5 Minutes
    • Quickstart: WASP Mapping Filter
    • RNA-seq Allelic Imbalance Tutorial
    • 10X scRNA-seq Tutorial
    • Single-Cell ATAC-seq Workflow
    • Comparative Imbalance Analysis Tutorial
    • ATAC-seq Allelic Imbalance Analysis Tutorial
    • Statistical Methods Tutorial: Understanding WASP2’s Beta-Binomial Framework
    • Statistical Methods
    • Allele Counting Algorithm
    • WASP Mapping Bias Correction
    • Beta-Binomial Model for Allelic Imbalance
    • Dispersion Parameter Estimation
    • False Discovery Rate Correction
    • Counting Module API
    • Mapping Module API
    • Analysis Module API
    • Development Guide
    • Seqera AI Development Integration
    • Changelog
  • GitHub
  • PyPI
  • Installation
  • Quick Start
  • Counting Module
  • Mapping Module (WASP)
  • Analysis Module
  • Single-Cell Analysis
  • Quickstart: Count Alleles in 5 Minutes
  • Quickstart: WASP Mapping Filter
  • RNA-seq Allelic Imbalance Tutorial
  • 10X scRNA-seq Tutorial
  • Single-Cell ATAC-seq Workflow
  • Comparative Imbalance Analysis Tutorial
  • ATAC-seq Allelic Imbalance Analysis Tutorial
  • Statistical Methods Tutorial: Understanding WASP2’s Beta-Binomial Framework
  • Statistical Methods
  • Allele Counting Algorithm
  • WASP Mapping Bias Correction
  • Beta-Binomial Model for Allelic Imbalance
  • Dispersion Parameter Estimation
  • False Discovery Rate Correction
  • Counting Module API
  • Mapping Module API
  • Analysis Module API
  • Development Guide
  • Seqera AI Development Integration
  • Changelog
  • GitHub
  • PyPI

Python Module Index

a | c | m
 
a
- analysis
    analysis.__main__
    analysis.as_analysis
    analysis.as_analysis_sc
    analysis.compare_ai
    analysis.run_analysis
    analysis.run_analysis_sc
    analysis.run_compare_ai
 
c
- counting
    counting.__main__
    counting.count_alleles
    counting.count_alleles_sc
    counting.filter_variant_data
    counting.parse_gene_data
    counting.run_counting
    counting.run_counting_sc
 
m
- mapping
    mapping.__main__
    mapping.filter_remap_reads
    mapping.intersect_variant_data
    mapping.make_remap_reads
    mapping.remap_utils
    mapping.run_mapping
    mapping.wasp_data_files

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