Mapping Module API
==================

The mapping module implements the WASP algorithm for unbiased read remapping to correct reference bias.

filter_remap_reads
------------------

.. automodule:: mapping.filter_remap_reads
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intersect_variant_data
----------------------

.. automodule:: mapping.intersect_variant_data
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make_remap_reads
----------------

.. automodule:: mapping.make_remap_reads
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remap_utils
-----------

.. automodule:: mapping.remap_utils
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run_mapping
-----------

.. automodule:: mapping.run_mapping
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wasp_data_files
---------------

.. automodule:: mapping.wasp_data_files
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CLI Entry Point
---------------

.. automodule:: mapping.__main__
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