Analysis Module API
===================

The analysis module provides statistical detection of allelic imbalance using beta-binomial models.

Core Statistical Engine
-----------------------

as_analysis
~~~~~~~~~~~

.. automodule:: analysis.as_analysis
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as_analysis_sc
~~~~~~~~~~~~~~

.. automodule:: analysis.as_analysis_sc
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Group Comparison
----------------

compare_ai
~~~~~~~~~~

.. automodule:: analysis.compare_ai
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Analysis Runners
----------------

run_analysis
~~~~~~~~~~~~

.. automodule:: analysis.run_analysis
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run_analysis_sc
~~~~~~~~~~~~~~~

.. automodule:: analysis.run_analysis_sc
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run_compare_ai
~~~~~~~~~~~~~~

.. automodule:: analysis.run_compare_ai
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CLI Entry Point
---------------

.. automodule:: analysis.__main__
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